BNL Materials Studio User Group: 28 march 2003

Questions from the group in the Materials Science department. See other pages and the tutorials for info on monitoring the powder diffraction while moving or rotating groups of atoms in amodel structure. I also made a promise to reinstate our Discover license for a few months, and this was done, the module is available since 7 july 2003 and should last at least until september, maybe to be extended even further.

Diffraction from a model interface?

To use the Reflex powder diffraction module in Materials Studio, you have to define a three dimensional unit cell. Interfaces can be modelled and built, but they are two-dimensional crystal objects. For example, I can load in the Si crystal structure and cleave a (001) surface using Build -> Surfaces -> Cleave surface. This first figure shows a particular choice of 4 by 4 in-plane cells, and about 1 unit cell's worth of atoms in the slab. Note that it redefined the lattice spacing to reflect the primitive cell in this orientation. Another procedure is to build a surface manually using Build -> Surfaces -> Build surface. I did this to make a square net of oxygens with a spacing matching that of the Si atoms. Using Build -> Build layers, I glued them together and then selected the oxygen layer and moved it closer to the Si atoms. Diffraction from this "crystal" is kind of a funny thing, there are peaks from the meaningless out of plane direction, but you can weed those out from the table of calculated positions and intensities (i.e. delete everything with a nonzero L index). For example in the graph below I compare the diffraction from the slab with and without the oxygens. The oxygens remove some systematic absences in this example.

Cerius2 faulted and single crystal diffraction modules: dynamical? electron or just x-ray?

To be continued.

10 may 2002 The basics: intro to the software, model building, basic questions
17 may 2002 Powder diffraction package, input/output of models and files
31 may 2002 Notes about charges and bonds; tables of bond lengths and angles
28 march 2003 Diffraction from interfaces; Cerius2 faulted and single crystals and diffraction


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updated by E. DiMasi 15 July 2003 (dimasi@bnl.gov)